Use the growing set of software applications and tools available on our systems or install your own. TTI will also help you port your application to our systems and get you up and running quickly. We can even install, configure, and tailor almost any application that you need, for free. On TTI's clusters you will find many applications ranging from general purpose programming and optimized mathematics libraries to specialized software for your industry. Whether it's in-house, open-source, or commercial software, TTI will get it working for you.

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Your Application

Featured Applications

Mathematics

Programming

Rendering

Bio Sciences

Your Applications
	Upload your code, database, libraries, and scripts to TTI. Install open source applications in your account or simply request Support to do it for you. Use TTI's suite of compilers, libraries, and database servers to develop and debug your own serial or parallel applications. You can do your development at your site or directly on TTI's cluster computing environment. Take advantage of TTI's free customer support to help you port your code to TTI's cluster computing environment. TTI's computing environment is very flexible and can be customized to fit your unique requirements.
Featured Applications
	Name: Star-P® for MATLAB® or Python Website: www.starpondemand.com Description: Star-P software is a client-server parallel-computing platform that’s been designed to work with multiple Very High Level Language (VHLL) client applications such as MATLAB®, Python, or R, and has built-in tools to expand VHLL computing capability through addition of libraries and hardware-based accelerators. Star-P® is available on demand.

Mathematics
	Name: FreeMat Website: freemat.sourceforge.net Description: FreeMat is a free environment for rapid engineering and scientific prototyping and data processing. It is similar to commercial systems such as MATLAB from Mathworks, and IDL from Research Systems, but is Open Source. FreeMat is available under the GPL license. Name: Abinit Website: abinit.org Description: ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudo potentials and a plane wave basis. ABINIT also includes options to optimize the geometry according to the DFT forces and stresses, or to perform molecular dynamics simulations using these forces, or to generate dynamical matrices, Born effective charges, and dielectric tensors. Excited states can be computed within the Time-Dependent Density Functional Theory (for molecules), or within Many-Body Perturbation Theory (the GW approximation). In addition to the main ABINIT code, different utility programs are provided. Name: ATLAS Website: sourceforge.net/projects/math-atlas Description: ATLAS (Automatically Tuned Linear Algebra Software) provides highly optimized Linear Algebra kernels for arbitrary cache-based architectures. ATLAS provides ANSI C and Fortran77 interfaces for the entire BLAS API, and the LAPACK AP. Name: Metis Website: glaros.dtc.umn.edu/gkhome/views/metis Description: METIS is a set of serial programs for partitioning graphs, partitioning finite element meshes, and producing fill reducing orderings for sparse matrices. The algorithms implemented in METIS are based on the multilevel recursive-bisection, multilevel k-way, and multi-constraint partitioning schemes. Name: ParMetis Website: glaros.dtc.umn.edu/gkhome/views/metis Description: ParMETIS is an MPI-based parallel library that implements a variety of algorithms for partitioning unstructured graphs, meshes, and for computing fill-reducing orderings of sparse matrices. ParMETIS extends the functionality provided by METIS and includes routines that are especially suited for parallel AMR computations and large scale numerical simulations. The algorithms implemented in ParMETIS are based on the parallel multilevel k-way graph-partitioning, adaptive repartitioning, and parallel multi-constrained partitioning schemes. Name: SuiteSparse Website: www.cise.ufl.edu/research/sparse/SuiteSparse Description: SuiteSparse is a set of programs and libraries that contains various tools for handling sparse matrices. Name: FFTW Website: fftw.org Description: FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine transforms or DCT/DST). Name: NumPy Website: numpy.scipy.org Description: NumPy is the fundamental package needed for scientific computing with Python. It contains a powerful N-dimensional array object, sophisticated (broadcasting) functions, basic linear algebra functions, basic Fourier transforms, sophisticated random number capabilities, and tools for integrating Fortran code. Name: PetSC Website: www-unix.mcs.anl.gov/petsc/petsc-as/index.html Description: PETSc is a suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations. It employs the MPI standard for all message-passing communication. Name: FEniCS Website: www.fenics.org/wiki/FEniCS_Project Description: FEniCS is a suite of computation mathematics modeling tools. It contains a C++/Python library for solving differential equations, optimizations for evaluation of variational forms, a compiler for finite element variational forms, tabulations of finite element function spaces, simple inlining of C / C++ code in Python, automation for the simulation of mechanical systems and several other CMM elements.

Programming
	Name: MPICH2 Website: www.mcs.anl.gov/mpi/mpich2 Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. Name: Boost Website: www.boost.org Description: Boost provides free peer-reviewed portable C++ source libraries including tools for string and text processing, containers, iterators, algorithms, function objects and higher-order programming, generic programming, template metaprogramming, math and numerics, programming interfaces, and many other. Name: Java Website: www.sun.com/java Description: Java technology is an object-oriented, platform-independent, high-performance multithreaded programming environment. Name: R Website: www.r-project.org Description: R is a language and environment for statistical computing and graphics. R provides a wide variety of statistical (linear and nonlinear modeling, classical statistical tests, time-series analysis, classification, clustering, ...) and graphical techniques, and is highly extensible.

Rendering
	Name: Radiance Website: radsite.lbl.gov/radiance Description: RADIANCE is a highly accurate ray-tracing software system for UNIX computers. Name: Blender Website: www.blender.org Description: Blender is the most powerful free open source 3D graphics, rendering, gaming, and content creation suite, available for all major operating systems under the GNU General Public License.

Bio Sciences
	Name: InterProScan Website: www.ebi.ac.uk/interpro Description: InterProScan is a tool that combines different protein signature recognition methods into one resource. The number of signature databases and their associated scanning tools, as well as the further refinement procedures, increases the complexity of the problem. InterProScan performs a considerable amount of data look-up from various databases and program outputs. The Perl-based InterProScan is intended to be an extensible and scalable system optimized to cope with bulk data processing. Name: AutoDock Website: autodock.scripps.edu Description: AutoDock is a suite of automated docking tools. It is designed to predict how small molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure. AutoDock actually consists of two main programs: AutoDock performs the docking of the ligand to a set of grids describing the target protein; AutoGrid pre-calculates these grids. Name: HMMER Website: hmmer.janelia.org Description: Profile hidden Markov models (profile HMMs) can be used to do sensitive database searching using statistical descriptions of a sequence family's consensus. HMMER is a freely distributable implementation of profile HMM software for protein sequence analysis. HMMER is available for use on Tsunamic Technologies' clusters.